STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yijO3Putative HTH-type transcriptional regulator yisR. (306 aa)    
Predicted Functional Partners:
BN8_02474
Hypothetical protein.
       0.732
BN8_02674
WGS project CAIT00000000 data, contig 6; HTH-type transcriptional activator rhaR AltName: Full=L-rhamnose operon transcriptional activator rhaR.
  
     0.717
BN8_04880
HTH-type transcriptional activator rhaS AltName: Full=L-rhamnose operon regulatory protein rhaS.
  
   0.672
BN8_00843
Regulatory protein pchR.
  
     0.670
BN8_02406
Putative HTH-type transcriptional regulator HI1052.
  
     0.636
BN8_04052
Transcriptional regulator, AraC family.
  
     0.622
ptlR
Transcriptional regulator, AraC family.
  
     0.615
BN8_01212
Transcriptional regulator, AraC family.
  
   0.605
BN8_05497
Transcriptional regulator, AraC family.
  
   0.605
BN8_05170
Transcriptional regulator, AraC family.
  
   0.571
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.