STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_02492Xylose isomerase domain protein TIM barrel. (304 aa)    
Predicted Functional Partners:
BN8_03798
Oxidoreductase domain protein.
  
    0.796
BN8_02491
Hypothetical protein.
  
    0.712
BN8_01213
Xylose isomerase domain protein TIM barrel.
  
     0.631
BN8_01214
Oxidoreductase domain protein.
  
    0.589
BN8_01833
Chorismate mutase.
  
  
  0.582
BN8_03186
Hypothetical protein.
  
     0.572
BN8_05082
Oxidoreductase domain protein.
  
    0.546
BN8_00385
Xylose isomerase domain protein TIM barrel.
  
     0.542
BN8_00555
Oxidoreductase domain protein.
 
 
  0.533
BN8_02131
Xylose isomerase domain protein TIM barrel.
  
     0.511
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.