STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_02859Putative response regulatory protein VC_A0850. (259 aa)    
Predicted Functional Partners:
BN8_02860
Inner membrane protein ypdA.
 
   0.951
BN8_03134
Inner membrane protein ypdA.
 
   0.808
BN8_00247
Two-component system, LytT family, sensor kinase.
  
  0.807
BN8_00578
Sensor protein lytS.
 
   0.797
BN8_00448
Inner membrane protein yehU.
  
   0.794
BN8_06703
Inner membrane protein yehU.
  
   0.791
BN8_01885
Signal transduction histidine kinase, LytS.
  
   0.786
BN8_00405
Sensor protein lytS.
  
   0.783
ypdA
Sensor protein lytS.
  
 
  0.783
BN8_06481
Inner membrane protein yehU.
  
   0.782
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.