STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_03027RagB/SusD domain protein. (525 aa)    
Predicted Functional Partners:
BN8_03028
Hypothetical protein.
 
  
 0.948
susC
Hypothetical protein.
     0.902
BN8_03023
Alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
     0.731
cirA9
TonB-dependent receptor.
 
     0.711
BN8_01786
Alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
     0.684
BN8_01720
Glycoside hydrolase 97.
 
     0.639
ompH
Outer membrane protein.
  
 
   0.597
BN8_03029
Alpha amylase catalytic region.
       0.586
BN8_02007
TonB-dependent receptor plug.
 
     0.564
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
    
   0.562
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.