STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_03631D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase. (529 aa)    
Predicted Functional Partners:
BN8_06060
Peptidase S13 D-Ala-D-Ala carboxypeptidase C.
 
  
 
0.889
BN8_04642
Glycoside hydrolase family 3 domain protein.
 
  
 0.730
BN8_05720
Beta-N-acetylhexosaminidase.
 
  
 0.727
BN8_03867
Peptidase U61 LD-carboxypeptidase A.
 
  
 0.712
BN8_04529
Peptidase U61 LD-carboxypeptidase A.
 
  
 0.691
ankB
Putative ankyrin repeat protein MM_0045.
   
   0.666
BN8_02289
Putative ankyrin repeat protein RF_0381.
   
   0.666
BN8_04900
Peptidoglycan glycosyltransferase.
  
  
 0.585
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.530
BN8_05817
Hypothetical protein.
     
 0.519
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.