STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_03646Hypothetical protein. (203 aa)    
Predicted Functional Partners:
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.815
BN8_03647
phiRv1 phage protein.
       0.790
BN8_03648
Putative terminase large subunit.
       0.790
BN8_03649
Hypothetical protein.
       0.773
BN8_00249
Aspartate kinase.
  
 
 0.768
BN8_05744
Oxidoreductase FAD/NAD(P)-binding domain protein.
   
   0.628
BN8_05759
Oxidoreductase FAD/NAD(P)-binding domain protein.
   
   0.628
BN8_00149
Hypothetical protein.
  
   0.571
BN8_00339
Hypothetical protein.
  
   0.571
BN8_00482
Hypothetical protein.
  
   0.571
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.