STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_03787Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (404 aa)    
Predicted Functional Partners:
acrB3
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.968
BN8_00173
RND efflux system, outer membrane lipoprotein, NodT family.
 
  0.911
BN8_03989
RND efflux system, outer membrane lipoprotein, NodT family.
 
  0.900
BN8_01898
RND efflux system, outer membrane lipoprotein, NodT family.
 
  0.897
acrB1
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.896
BN8_03110
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.888
BN8_03990
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.887
BN8_01897
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.885
BN8_02327
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.876
BN8_04941
Outer membrane efflux protein.
   
  0.836
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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