STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_04237Protein of unknown function DUF140. (271 aa)    
Predicted Functional Partners:
BN8_04238
ABC transporter related protein.
 0.999
BN8_04239
Mammalian cell entry related domain protein.
 
 0.999
BN8_05782
ABC transporter related protein.
 0.998
BN8_06408
Mammalian cell entry related domain protein.
 
 0.995
BN8_03229
Sulfate transporter/antisigma-factor antagonist STAS.
   
  0.979
BN8_05781
Protein of unknown function DUF140.
  
  
 
0.928
BN8_04240
O-methyltransferase family 2.
 
     0.728
BN8_05313
ABC transporter related protein.
 
 
   0.686
BN8_01384
ABC transporter related; Belongs to the ABC transporter superfamily.
    
  0.639
BN8_00080
ABC transporter related protein.
   
   0.620
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.