STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_04285Hypothetical protein. (1028 aa)    
Predicted Functional Partners:
tycC
Amino acid adenylation domain protein.
  
  
 0.973
BN8_04284
Hypothetical protein.
 
     0.896
BN8_04537
Hypothetical protein.
  
     0.694
BN8_06521
Amino acid adenylation domain protein.
  
  
 0.672
BN8_02536
RagB/SusD domain protein.
  
 
   0.656
BN8_00482
Hypothetical protein.
 
     0.645
BN8_06018
RagB/SusD domain protein.
  
 
   0.635
BN8_00111
Hypothetical protein.
  
 
   0.623
BN8_02534
RagB/SusD domain protein.
  
 
   0.603
BN8_03128
RagB/SusD domain protein.
  
 
   0.576
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.