STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_04686Hypothetical protein. (230 aa)    
Predicted Functional Partners:
BN8_04685
Dihydrodipicolinate reductase; Belongs to the DapB family.
       0.797
lepB3
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.786
BN8_05644
Hypothetical protein.
  
     0.749
BN8_02876
Hypothetical protein.
  
    0.714
BN8_04138
Hypothetical protein.
  
     0.688
BN8_02879
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.680
BN8_03612
Protein of unknown function DUF450.
  
     0.680
BN8_01250
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.664
BN8_03352
Hypothetical protein.
  
     0.652
BN8_06405
Organic solvent tolerance protein OstA-like protein.
  
    0.640
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.