STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_04967RagB/SusD domain protein. (573 aa)    
Predicted Functional Partners:
BN8_04968
TonB-dependent receptor plug.
 
 
   0.943
BN8_02007
TonB-dependent receptor plug.
  
 
   0.776
BN8_04160
TonB-dependent receptor plug.
  
 
   0.767
BN8_00697
TonB-dependent receptor plug.
  
     0.749
BN8_05124
TonB-dependent receptor plug.
  
 
   0.723
BN8_03213
TonB-dependent receptor plug.
  
 
   0.713
BN8_04308
Hypothetical protein.
  
 
   0.686
BN8_00815
TonB-dependent receptor plug.
  
 
   0.680
BN8_00110
TonB-dependent receptor plug.
  
 
   0.679
BN8_00125
TonB-dependent receptor plug.
  
 
   0.678
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.