STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_05251Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family. (766 aa)    
Predicted Functional Partners:
BN8_02104
4-alpha-glucanotransferase.
 
 0.996
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
0.956
BN8_01536
Trehalose synthase.
 
 
0.950
BN8_04631
Starch synthase.
 
 
 0.944
glgP
Starch phosphorylase.
  
 
 0.906
BN8_00104
Trehalose synthase-fused maltokinase-like protein.
 
 
 0.875
BN8_03023
Alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
 
0.837
treZ3
Maltooligosyltrehalose trehalohydrolase.
 
 
0.797
treZ1
Maltooligosyltrehalose trehalohydrolase.
 
 
0.796
BN8_05250
Hypothetical protein.
       0.773
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.