STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_05297Beta-mannosidase; Belongs to the glycosyl hydrolase 2 family. (963 aa)    
Predicted Functional Partners:
BN8_05302
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
  0.891
BN8_05296
Protein spinster homolog 1.
 
     0.815
xynA
Glycoside hydrolase family protein.
 
     0.774
gno
Short-chain dehydrogenase/reductase SDR.
  
    0.763
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.743
BN8_05295
Protein dlpA.
 
     0.725
BN8_00911
Glucuronoxylanase xynC; Belongs to the glycosyl hydrolase 30 family.
 
  
 0.709
BN8_05299
Hypothetical protein.
       0.693
BN8_02770
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.587
BN8_05303
RagB/SusD domain protein.
 
     0.499
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.