STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_05383Tetratricopeptide TPR_2 repeat protein. (594 aa)    
Predicted Functional Partners:
BN8_05384
Hypothetical protein.
 
  
 0.774
BN8_04189
Tetratricopeptide repeat protein 6 Short=TPR repeat protein 6.
 
 
 0.766
BN8_03229
Sulfate transporter/antisigma-factor antagonist STAS.
 
     0.750
BN8_04445
TPR repeat-containing protein.
 
  
  0.724
BN8_02507
TPR repeat-containing protein.
 
  
  0.715
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.699
yibP
Peptidase M23.
 
     0.690
BN8_02475
Tetratricopeptide TPR_2 repeat protein.
 
  
  0.687
BN8_02876
Hypothetical protein.
 
   
 0.668
BN8_03319
Multi-sensor hybrid histidine kinase.
 
  
 0.664
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.