STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_05617Hypothetical protein. (349 aa)    
Predicted Functional Partners:
BN8_05618
Hypothetical protein.
 
     0.953
BN8_05619
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.879
BN8_02601
Hypothetical protein.
  
     0.663
BN8_01140
Hypothetical protein.
  
     0.641
BN8_00320
Hypothetical protein.
  
     0.625
BN8_05979
Tetratricopeptide repeat protein.
  
     0.620
BN8_04597
TonB-dependent siderophore receptor.
  
   0.592
BN8_04348
TonB-dependent receptor.
  
   0.568
BN8_05526
Colicin I receptor.
  
   0.568
BN8_03826
Patched family protein.
  
     0.564
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
Server load: low (26%) [HD]