STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_06068Putative cytoplasmic protein. (508 aa)    
Predicted Functional Partners:
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
   
 
  0.883
BN8_01087
Competence/damage-inducible protein CinA; Belongs to the CinA family.
     
 0.847
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.832
BN8_06069
Haloacid dehalogenase domain protein hydrolase.
    
  0.667
BN8_01784
Protein of unknown function DUF1460.
 
     0.633
BN8_03765
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
    
 0.622
BN8_04454
Exonuclease V subunit alpha.
  
     0.613
BN8_06681
Lytic transglycosylase catalytic.
  
  
  0.609
BN8_00329
Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
   
    0.581
BN8_05819
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
     
 0.580
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.