STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_06189Peptidase M56 BlaR1. (261 aa)    
Predicted Functional Partners:
BN8_06190
Transcriptional repressor, CopY family.
 
 
 0.978
BN8_06188
Hypothetical protein.
      0.927
BN8_00368
Transcriptional repressor, CopY family.
 
 
 0.904
BN8_01460
Transcriptional repressor, CopY family.
 
 
 0.900
BN8_06287
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   
  0.854
BN8_04410
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   
  0.819
BN8_05742
Transcriptional repressor, CopY family.
 
 
 0.626
BN8_01459
Hypothetical protein.
  
  
 
0.590
BN8_06191
Gliding motility-associated lipoprotein GldH.
       0.542
BN8_06192
Phosphoesterase PA-phosphatase related.
       0.542
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.