STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN8_06573Hypothetical protein. (500 aa)    
Predicted Functional Partners:
BN8_06574
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.803
BN8_06575
Secreted repeat of unknown function.
 
     0.658
BN8_06572
Rieske (2Fe-2S) domain protein.
       0.614
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
    0.582
BN8_00204
Peptidoglycan-binding lysin domain protein.
   
    0.580
BN8_03813
Trp repressor binding protein; Belongs to the WrbA family.
   
    0.579
BN8_03202
Membrane-bound dehydrogenase domain protein.
  
     0.538
BN8_06293
Protein of unknown function DUF303 acetylesterase putative.
 
     0.533
BN8_02350
Hypothetical protein.
  
     0.527
BN8_02511
Hypothetical protein.
  
     0.521
Your Current Organism:
Fibrisoma limi
NCBI taxonomy Id: 1185876
Other names: F. limi BUZ 3, Fibrisoma limi BUZ 3, Fibrisoma limi str. BUZ 3, Fibrisoma limi strain BUZ 3, Flexibacteraceae bacterium BUZ 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.