STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ33384.1Sporulation protein YlmC, PRC-barrel domain family. (97 aa)    
Predicted Functional Partners:
SER12591.1
Hypothetical protein.
  
    0.766
SER28750.1
Signal peptidase, endoplasmic reticulum-type.
  
     0.753
SEQ23620.1
Presenilin-like membrane protease, A22 family.
  
     0.752
SEQ78123.1
Signal peptidase, endoplasmic reticulum-type.
  
     0.750
SEQ78164.1
Signal peptidase, endoplasmic reticulum-type.
  
     0.749
SEQ46859.1
Predicted transcriptional regulator.
  
     0.741
SER52695.1
Replication factor A1.
  
     0.741
SER52670.1
Hypothetical protein.
  
     0.740
SEQ93476.1
Sporulation protein YlmC, PRC-barrel domain family.
  
     0.738
SER91556.1
Hypothetical protein.
  
     0.729
Your Current Organism:
Natrinema salaciae
NCBI taxonomy Id: 1186196
Other names: CECT 8172, DSM 25055, JCM 17869, N. salaciae, Natrinema salaciae Albuquerque et al. 2012, Natrinema sp. MDB20, Natrinema sp. MDB25, strain MDB25
Server load: low (28%) [HD]