STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER20322.1Signal peptidase, endoplasmic reticulum-type. (388 aa)    
Predicted Functional Partners:
SER20294.1
Hypothetical protein.
       0.807
SER26519.1
Signal peptidase, endoplasmic reticulum-type.
  
  
 
0.729
SER36690.1
ABC-2 type transport system permease protein.
  
     0.673
SER86931.1
Hypothetical protein.
  
     0.667
SEP89029.1
Cupin domain protein.
  
     0.656
lig
DNA ligase-1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
    
 0.634
SEQ80240.1
PAP2 superfamily protein.
  
     0.611
SEQ46263.1
PAP2 superfamily protein.
  
     0.603
SEQ95850.1
Hypothetical protein.
  
     0.592
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
    0.582
Your Current Organism:
Natrinema salaciae
NCBI taxonomy Id: 1186196
Other names: CECT 8172, DSM 25055, JCM 17869, N. salaciae, Natrinema salaciae Albuquerque et al. 2012, Natrinema sp. MDB20, Natrinema sp. MDB25, strain MDB25
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.