STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDC3LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 3. (509 aa)    
Predicted Functional Partners:
DDX6
Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.
   
 0.998
DCP1A
mRNA-decapping enzyme 1A isoform X1.
   
 0.994
DCP2
m7GpppN-mRNA hydrolase isoform X1.
  
 0.992
DCP1B
mRNA-decapping enzyme 1B.
   
 0.990
EDC4
Enhancer of mRNA-decapping protein 4.
   
 0.986
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.950
PATL1
Protein PAT1 homolog 1 isoform X1.
    
 0.935
XRN1
5'-3' exoribonuclease 1.
   
 
 0.930
PATL2
Protein PAT1 homolog 2.
    
 0.905
LSM2
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.879
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.