STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR20WD repeat-containing protein 20 isoform X1. (600 aa)    
Predicted Functional Partners:
WDR48
WD repeat-containing protein 48 isoform X1.
    
 0.990
USP12
Ubiquitin carboxyl-terminal hydrolase 12; Belongs to the peptidase C19 family.
   
 0.965
USP46
Ubiquitin carboxyl-terminal hydrolase 46 isoform X1; Belongs to the peptidase C19 family.
   
 0.960
USP1
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 0.771
TMEM74
Transmembrane protein 74.
      
 0.742
DCAF13
DDB1- and CUL4-associated factor 13.
   
 
 0.716
PAK1IP1
LOW QUALITY PROTEIN: p21-activated protein kinase-interacting protein 1.
   
  
 0.714
LOC103074247
Protein reprimo-like.
    
 
 0.707
USP35
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 0.701
USP38
LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 38; Belongs to the peptidase C19 family.
   
 0.701
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.