STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX7Sorting nexin-7. (451 aa)    
Predicted Functional Partners:
SNX4
Sorting nexin-4.
  
 
 
0.912
GAK
cyclin-G-associated kinase.
   
 0.808
SNX32
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.764
SNX5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
0.751
SNX6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
0.744
LRRC1
Leucine-rich repeat-containing protein 1.
   
  
 0.732
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.723
HS2ST1
Heparan sulfate 2-O-sulfotransferase 1.
      
 0.692
VPS26B
Vacuolar protein sorting-associated protein 26B.
   
 
 0.651
VPS29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.634
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.