STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF115E3 ubiquitin-protein ligase RNF115. (293 aa)    
Predicted Functional Partners:
BAG6
Large proline-rich protein BAG6 isoform X3.
   
 
 0.781
LRRN3
Leucine-rich repeat neuronal protein 3-like.
    
 0.717
SBDS
Ribosome maturation protein SBDS.
      
 0.690
SLC9A3R1
Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.
   
 
 0.658
NSFL1C
NSFL1 cofactor p47 isoform X2.
   
 
 0.526
RSPO1
R-spondin-1.
   
 0.521
TMLHE
Trimethyllysine dioxygenase, mitochondrial isoform X1.
      
 0.506
LOC103083100
ubiquitin-60S ribosomal protein L40-like.
    
 0.504
UBA52
ubiquitin-60S ribosomal protein L40.
    
 0.504
GET4
Golgi to ER traffic protein 4 homolog.
   
 
 0.501
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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