STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDB1DNA damage-binding protein 1. (1140 aa)    
Predicted Functional Partners:
DDB2
DNA damage-binding protein 2 isoform X1.
    
 0.999
CUL4B
cullin-4B isoform X1; Belongs to the cullin family.
   
 0.999
CUL4A
cullin-4A; Belongs to the cullin family.
   
 0.999
VPRBP
Protein VPRBP.
    
 0.998
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 0.998
ERCC8
DNA excision repair protein ERCC-8 isoform X1.
    
 0.995
CRBN
Protein cereblon isoform X1.
    
 
 0.993
DTL
Denticleless protein homolog isoform X1.
    
 0.991
DDA1
DET1- and DDB1-associated protein 1.
    
 0.987
DCAF5
DDB1- and CUL4-associated factor 5 isoform X2.
    
 0.983
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.