ARL13A protein (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARL13A

ADP-ribosylation factor-like protein 13A. (319 aa)

Predicted Functional Partners:

TBCD

0.872

PDE6D

0.872

LOC103071311

0.744

ARL2BP

0.744

ARL16

0.721

UNC119

0.677

MYBPC1

0.447

TMEM67

0.439

NPHP4

0.439

TBCB

0.425

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL13A	ARL16	A0A340Y6Q1	A0A340XQG9	ADP-ribosylation factor-like protein 13A.	ADP-ribosylation factor-like protein 16.	0.721
ARL13A	ARL2BP	A0A340Y6Q1	A0A340YA73	ADP-ribosylation factor-like protein 13A.	ADP-ribosylation factor-like protein 2-binding protein.	0.744
ARL13A	LOC103071311	A0A340Y6Q1	A0A340XF79	ADP-ribosylation factor-like protein 13A.	ADP-ribosylation factor-like protein 2-binding protein-like.	0.744
ARL13A	MYBPC1	A0A340Y6Q1	A0A340Y1B6	ADP-ribosylation factor-like protein 13A.	Myosin-binding protein C, slow-type isoform X1.	0.447
ARL13A	NPHP4	A0A340Y6Q1	A0A340X0B0	ADP-ribosylation factor-like protein 13A.	Nephrocystin-4.	0.439
ARL13A	PDE6D	A0A340Y6Q1	A0A340XTZ8	ADP-ribosylation factor-like protein 13A.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	0.872
ARL13A	TBCB	A0A340Y6Q1	A0A340YBL2	ADP-ribosylation factor-like protein 13A.	Tubulin-folding cofactor B.	0.425
ARL13A	TBCD	A0A340Y6Q1	A0A340XCW2	ADP-ribosylation factor-like protein 13A.	Tubulin-specific chaperone D.	0.872
ARL13A	TMEM67	A0A340Y6Q1	A0A340WUZ2	ADP-ribosylation factor-like protein 13A.	Meckelin.	0.439
ARL13A	UNC119	A0A340Y6Q1	A0A340WXU7	ADP-ribosylation factor-like protein 13A.	Protein unc-119 homolog A.	0.677
ARL16	ARL13A	A0A340XQG9	A0A340Y6Q1	ADP-ribosylation factor-like protein 16.	ADP-ribosylation factor-like protein 13A.	0.721
ARL16	PDE6D	A0A340XQG9	A0A340XTZ8	ADP-ribosylation factor-like protein 16.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	0.491
ARL2BP	ARL13A	A0A340YA73	A0A340Y6Q1	ADP-ribosylation factor-like protein 2-binding protein.	ADP-ribosylation factor-like protein 13A.	0.744
LOC103071311	ARL13A	A0A340XF79	A0A340Y6Q1	ADP-ribosylation factor-like protein 2-binding protein-like.	ADP-ribosylation factor-like protein 13A.	0.744
MYBPC1	ARL13A	A0A340Y1B6	A0A340Y6Q1	Myosin-binding protein C, slow-type isoform X1.	ADP-ribosylation factor-like protein 13A.	0.447
NPHP4	ARL13A	A0A340X0B0	A0A340Y6Q1	Nephrocystin-4.	ADP-ribosylation factor-like protein 13A.	0.439
NPHP4	TMEM67	A0A340X0B0	A0A340WUZ2	Nephrocystin-4.	Meckelin.	0.778
PDE6D	ARL13A	A0A340XTZ8	A0A340Y6Q1	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	ADP-ribosylation factor-like protein 13A.	0.872
PDE6D	ARL16	A0A340XTZ8	A0A340XQG9	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	ADP-ribosylation factor-like protein 16.	0.491
PDE6D	UNC119	A0A340XTZ8	A0A340WXU7	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	Protein unc-119 homolog A.	0.616