STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MESDC1Mesoderm development candidate 1. (362 aa)    
Predicted Functional Partners:
VCL
Vinculin isoform X1.
   
 0.902
PIP5K1C
Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma.
    
 0.791
APBB1IP
Amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like.
    
 0.718
MESDC2
LDLR chaperone MESD.
      
 0.694
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.674
PIP5K1A
Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X1.
    
 0.660
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.655
LOC103080445
Catenin alpha-2-like isoform X1.
   
 0.622
CTNNAL1
Alpha-catulin.
   
 0.622
CTNNA3
Catenin alpha-3.
   
 0.622
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.