STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103078719Serine/arginine repetitive matrix protein 2-like. (237 aa)    
Predicted Functional Partners:
RBMX2
RNA-binding motif protein, X-linked 2 isoform X1.
   
 0.948
SNIP1
Smad nuclear-interacting protein 1.
   
 0.947
CWC22
pre-mRNA-splicing factor CWC22 homolog.
   
 
 0.885
DHX16
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16.
   
 0.875
CDC5L
Cell division cycle 5-like protein.
    
 
 0.873
SF3A2
Splicing factor 3A subunit 2.
    
 
 0.873
SF3B2
Splicing factor 3B subunit 2 isoform X1.
    
 
 0.865
BUD31
Protein BUD31 homolog.
    
 
 0.859
PRPF19
pre-mRNA-processing factor 19.
    
 
 0.856
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.853
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.