STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMZ2LOW QUALITY PROTEIN: archaelysin family metallopeptidase 2. (361 aa)    
Predicted Functional Partners:
KLHL29
Kelch-like protein 29.
      
 0.618
SMIM17
LOW QUALITY PROTEIN: small integral membrane protein 17.
      
 0.617
TMEM214
Transmembrane protein 214 isoform X1.
      
 0.614
SUPT3H
Transcription initiation protein SPT3 homolog isoform X1.
      
 0.600
DFFB
DNAation factor subunit beta.
      
 0.548
FKBP2
Peptidylprolyl isomerase.
      
 0.517
THSD4
LOW QUALITY PROTEIN: thrombospondin type-1 domain-containing protein 4.
      
 0.517
NIPAL3
NIPA-like protein 3.
      
 0.516
FAM135B
Protein FAM135B.
      
 0.516
SPRYD7
SPRY domain-containing protein 7 isoform X1.
      
 0.516
Your Current Organism:
Lipotes vexillifer
NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.