STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF05632.1Hypothetical protein; KEGG: afm:AFUA_6G09780 0.039 class V chitinase K01183. (181 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.850
EKF00192.1
Hypothetical protein; KEGG: ccs:CCNA_02444 0.54 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.789
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
   
    0.758
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.751
EKE97185.1
RNA methyltransferase; KEGG: sds:SDEG_1540 3.8e-24 putative type II DNA modification methyltransferase.
  
    0.718
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
    0.665
EKE97296.1
Hypothetical protein; KEGG: bfa:Bfae_17170 0.089 trans-aconitate methyltransferase K00598; Psort location: Cytoplasmic, score: 8.96.
  
    0.645
EKF03968.1
Putative R3H single-stranded nucleic acid binding protein; KEGG: bpm:BURPS1710b_A1185 0.071 maltose/maltodextrin import ATP-binding protein MalK K02023; Psort location: Cytoplasmic, score: 8.96.
  
    0.644
EKF00191.1
Single-stranded nucleic acid; KEGG: hau:Haur_0242 0.38 DNA-directed RNA polymerase, beta' subunit; K03046 DNA-directed RNA polymerase subunit beta'; Psort location: Cytoplasmic, score: 8.96.
  
    0.644
rpmF
Ribosomal protein L32; KEGG: bra:BRADO5576 0.031 folA; dihydrofolate reductase K00287; Belongs to the bacterial ribosomal protein bL32 family.
   
    0.636
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.