STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF05757.1KEGG: shn:Shewana3_3435 1.7e-30 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
ilvD
KEGG: ava:Ava_0023 1.7e-268 dihydroxy-acid dehydratase K01687; Psort location: Cytoplasmic, score: 8.96; Belongs to the IlvD/Edd family.
 
   
 0.606
EKF01914.1
KEGG: pjd:Pjdr2_5363 4.6e-15 transcriptional regulator, AraC family; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.541
EKF04346.1
KEGG: pjd:Pjdr2_5363 7.6e-16 transcriptional regulator, AraC family; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.539
EKF05079.1
GMP synthase; KEGG: ava:Ava_1294 0. glutamate synthase (ferredoxin) K00284.
 
   
 0.532
potA
Putative putrescine/spermidine ABC transporter ATPase protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.484
EKF04668.1
KEGG: pjd:Pjdr2_5363 7.5e-13 transcriptional regulator, AraC family.
  
  
 0.465
EKE96388.1
KEGG: npu:Npun_F4909 1.1e-35 two component AraC family transcriptional regulator.
  
  
 0.449
EKE96810.1
KEGG: npu:Npun_R3197 2.0e-36 two component AraC family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.407
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.