STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpiARibose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (249 aa)    
Predicted Functional Partners:
EKF04271.1
KEGG: npu:Npun_F1541 1.7e-117 ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 8.96.
  
 0.983
EKF02796.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
 0.965
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
   
 0.935
EKF03025.1
KEGG: npu:Npun_F2752 2.4e-173 phosphoribulokinase/uridine kinase K00855; Psort location: Cytoplasmic, score: 9.97.
     
 0.932
EKF05301.1
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 
 0.929
EKF01412.1
Phosphoglucomutase; KEGG: cyn:Cyan7425_0424 8.7e-240 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; K01835 phosphoglucomutase.
  
 
 0.927
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.924
EKF02310.1
Shikimate kinase; KEGG: npu:Npun_R5331 1.9e-61 carbohydrate kinase K00851.
    
 0.912
EKF06004.1
Phosphoribulokinase / Uridine kinase family protein; KEGG: ana:alr2350 1.4e-152 phosphoribulokinase K00855; Psort location: Cytoplasmic, score: 9.97.
     
 0.910
EKF03798.1
KEGG: npu:Npun_R4730 9.8e-177 carbohydrate kinase, FGGY; Psort location: Cytoplasmic, score: 8.96.
    
 0.849
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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