STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF04668.1KEGG: pjd:Pjdr2_5363 7.5e-13 transcriptional regulator, AraC family. (300 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.798
EKE97400.1
KEGG: ava:Ava_3046 0. ferredoxin (flavodoxin) oxidoreductase K03737.
     
 0.780
EKF00361.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
     
 0.780
EKE96388.1
KEGG: npu:Npun_F4909 1.1e-35 two component AraC family transcriptional regulator.
  
     0.765
EKE96810.1
KEGG: npu:Npun_R3197 2.0e-36 two component AraC family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96.
  
     0.757
EKE99936.1
KEGG: bur:Bcep18194_C7173 3.9e-07 two component AraC family transcriptional regulator K05971; Psort location: Cytoplasmic, score: 9.97.
  
     0.757
EKF05079.1
GMP synthase; KEGG: ava:Ava_1294 0. glutamate synthase (ferredoxin) K00284.
    
  0.731
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.685
EKE96610.1
ACT domain protein; KEGG: npu:Npun_F1023 3.5e-220 malic enzyme, NAD-binding K00027; Psort location: Cytoplasmic, score: 8.96.
     
 0.675
EKF04056.1
Sensor histidine kinase; KEGG: npu:Npun_R0896 0. multi-sensor hybrid histidine kinase; Psort location: CytoplasmicMembrane, score: 7.88.
     
 0.626
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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