STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF04673.1KEGG: bce:BC3051 1.1e-17 ribosomal-protein-alanine acetyltransferase K00676; Psort location: Cytoplasmic, score: 8.96. (185 aa)    
Predicted Functional Partners:
EKF04674.1
Hypothetical protein; KEGG: rsa:RSal33209_2270 0.25 pgk; phosphoglycerate kinase K00927; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
EKF04672.1
Hypothetical protein; KEGG: sat:SYN_01800 0.015 ribosomal large subunit pseudouridine synthase D K06180; Psort location: Cytoplasmic, score: 8.96.
       0.605
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.583
rnc-2
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.583
EKF04675.1
Hypothetical protein; KEGG: cyp:PCC8801_0205 0.39 hisD; histidinol dehydrogenase K00013; Psort location: Cytoplasmic, score: 8.96.
       0.470
EKE99922.1
Non-ribosomal peptide synthetase; KEGG: npu:Npun_R3431 0. amino acid adenylation domain-containing protein; Psort location: CytoplasmicMembrane, score: 8.46.
     
 0.433
EKF04676.1
Hypothetical protein; KEGG: ava:Ava_1425 0.00028 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA.
       0.404
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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