STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
sbcDDNA repair exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (417 aa)    
Predicted Functional Partners:
EKE99404.1
Exonuclease SbcC; KEGG: eci:UTI89_C0417 4.7e-41 sbcC; exonuclease subunit SbcC K03546; Psort location: Cytoplasmic, score: 9.97.
 
 0.989
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.960
EKF05571.1
Hypothetical protein; KEGG: dme:Dmel_CG17927 9.4e-11 Mhc; Myosin heavy chain K10352; Psort location: CytoplasmicMembrane, score: 9.80.
  
 0.933
EKF05409.1
Hypothetical protein; KEGG: edi:EDI_048910 4.1e-16 intracellular protein transport protein USO1; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.933
EKE98790.1
Putative DNA repair protein; KEGG: edi:EDI_048910 5.6e-12 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
  
 0.933
EKE97583.1
Hypothetical protein; KEGG: yli:YALI0F07557g 1.6e-08 YALI0F07557p; K08866 serine/threonine-protein kinase TTK/MPS1.
  
 0.933
EKF01815.1
RecF/RecN/SMC protein; KEGG: dan:Dana_GF11892 4.5e-10 GF11892 gene product from transcript GF11892-RA; K10866 DNA repair protein RAD50; Psort location: Cytoplasmic, score: 8.96.
  
 0.933
EKF06111.1
Sulfate permease; KEGG: eci:UTI89_C1400 1.2e-82 ychM; putative sulfate transporter YchM K03321; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.836
recA
Recombination protein A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.823
EKF01112.1
ATP-dependent helicase RecQ; KEGG: npu:Npun_F0932 4.3e-215 ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: CytoplasmicMembrane, score: 8.46.
   
 0.804
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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