STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF04862.1Hypothetical protein; KEGG: ava:Ava_1425 0.00010 UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA. (60 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.610
EKF04863.1
Hypothetical protein; KEGG: mar:MAE_39090 0.021 penicillin-binding protein; K05366 penicillin-binding protein 1A.
       0.572
EKF04865.1
Toxin-antitoxin system, antitoxin component, HicB family; KEGG: rha:RHA1_ro11179 0.21 glutaconate CoA-transferase K01041.
       0.500
EKF04866.1
Toxin-antitoxin system, toxin component, HicA family; KEGG: bpt:Bpet0886 0.31 fatty acid CoA ligase.
       0.500
EKF04861.1
CBS domain pair protein; KEGG: hpa:HPAG1_1423 8.6e-59 hemolysin domain-containing protein K00088.
       0.478
EKF04867.1
Hypothetical protein; KEGG: cje:Cj0159c 0.70 putative 6-pyruvoyl tetrahydropterin synthase K01737.
       0.471
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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