STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF05024.1KEGG: ava:Ava_C0033 1.3e-160 RNA-directed DNA polymerase K00986. (563 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
 
 0.715
EKE98062.1
KEGG: xtr:448246 0.68 MGC88972 protein; K00858 NAD+ kinase; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
   0.566
EKE97327.1
Hypothetical protein; KEGG: aap:NT05HA_1177 0.89 MTA/SAH nucleosidase; K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
   0.566
EKF02620.1
Transposase; KEGG: nha:Nham_4600 6.7e-17 feruloyl esterase.
  
     0.487
EKE98080.1
Conjugation protein, putative TraG family; KEGG: cpc:Cpar_0073 0.97 ATP-dependent metalloprotease FtsH K03798.
 
 
   0.483
EKE99549.1
Conjugation protein TraG; KEGG: tdn:Suden_0610 0.41 DEAD/DEAH box helicase-like; K11927 ATP-dependent RNA helicase RhlE.
 
 
   0.473
EKF05025.1
Hypothetical protein; KEGG: syp:SYNPCC7002_A2759 0.84 N-acyl-L-amino acid amidohydrolase; K01436 aminoacylase.
       0.458
EKE97679.1
Hypothetical protein; KEGG: nha:Nham_4600 2.6e-05 feruloyl esterase.
  
     0.435
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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