STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (222 aa)    
Predicted Functional Partners:
EKE97885.1
KEGG: ava:Ava_C0075 2.0e-226 DNA polymerase III beta subunit family protein K02338; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.960
EKF02734.1
DNA-directed DNA polymerase; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of repl [...]
  
 
 0.958
EKF01238.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
 
 0.955
EKF01144.1
AMP-binding enzyme; KEGG: npu:Npun_F2181 0. amino acid adenylation domain-containing protein.
   
 
 0.923
EKE97447.1
AMP-binding enzyme; KEGG: ava:Ava_1613 0. non-ribosomal peptide synthase.
   
 
 0.910
EKE97579.1
Putative lipid-A-disaccharide; KEGG: ana:alr4005 1.3e-176 hypothetical protein; K00748 lipid-A-disaccharide synthase.
  
 
 0.904
EKF04555.1
AMP-binding enzyme; KEGG: ava:Ava_C0009 0. amino acid adenylation; Psort location: CytoplasmicMembrane, score: 8.46.
   
 
 0.895
EKE99930.1
Hypothetical protein; KEGG: npu:Npun_R3452 0. AMP-dependent synthetase and ligase; Psort location: CytoplasmicMembrane, score: 8.46.
   
 
 0.895
EKE97888.1
KEGG: pab:PAB1128 1.3e-21 polI; DNA polymerase I; K02319 DNA polymerase I; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.881
EKF00393.1
KEGG: npu:Npun_R3585 0. ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.861
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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