STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF05178.1Hydrolase, NUDIX family; KEGG: ava:Ava_1823 5.3e-66 NUDIX hydrolase K03574; Belongs to the Nudix hydrolase family. (143 aa)    
Predicted Functional Partners:
EKF04712.1
KEGG: ana:all2917 2.0e-123 inositol monophophatase family protein; K01092 myo-inositol-1(or 4)-monophosphatase.
    
 0.900
argH
KEGG: ana:alr3887 4.1e-226 argininosuccinate lyase K01755.
      0.899
EKF05179.1
KEGG: fta:FTA_1583 1.7e-23 endoribonuclease L-PSP K07567.
       0.588
EKF05177.1
4-alpha-glucanotransferase; KEGG: npu:Npun_F5814 3.9e-237 4-alpha-glucanotransferase K00705.
       0.541
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
     
 0.536
EKF00068.1
Recombination protein J; KEGG: npu:Npun_R4754 0. single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.407
EKE99431.1
Recombination protein J; KEGG: ana:all1989 0. recJ; single-strand-DNA-specific exonuclease; K07462 single-stranded-DNA-specific exonuclease; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.407
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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