STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKF05325.1Putative integrase; KEGG: pmf:P9303_05381 2.2e-60 hypothetical protein; K00975 glucose-1-phosphate adenylyltransferase. (252 aa)    
Predicted Functional Partners:
rplS
Ribosomal protein L19 splS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
   0.924
aspS
aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
  
 0.887
rpmF
Ribosomal protein L32; KEGG: bra:BRADO5576 0.031 folA; dihydrofolate reductase K00287; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.887
rplQ
Ribosomal protein L17; KEGG: bxe:Bxe_B1353 0.065 putative acetyltransferase protein K00680; Psort location: Cytoplasmic, score: 9.97.
 
   0.875
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.868
rpmA
Ribosomal protein L27; KEGG: rca:Rcas_4308 0.62 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; K00860 adenylylsulfate kinase K00958; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family.
 
   0.830
rpsB
Ribosomal protein S2; KEGG: afu:AF1100 0.11 cdhA-1; acetyl-CoA decarbonylase/synthase complex subunit alpha K00192; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
  
   0.819
EKF00192.1
Hypothetical protein; KEGG: ccs:CCNA_02444 0.54 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase K01444; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.801
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
 
   0.791
rpsP
Ribosomal protein S16; KEGG: xac:XAC1808 0.0029 aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+); Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bS16 family.
  
   0.766
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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