STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF05390.1tRNA synthase; KEGG: npu:Npun_R0877 7.3e-204 RNA methyltransferase; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (455 aa)    
Predicted Functional Partners:
trmB
tRNA synthase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.674
pheT
KEGG: npu:Npun_F1087 0. phenylalanyl-tRNA synthetase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.94.
 
  
 0.659
rsmI
TIGR00096 protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.649
EKF00369.1
rRNA SAM-dependent protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.626
guaA
GMP synthase protein; Catalyzes the synthesis of GMP from XMP.
 
  
 0.602
prmA
Ribosomal protein L11; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
 
   
 0.573
rsmG
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
    0.551
EKF00595.1
tRNA guanosine-2'-O-methyltransferase; KEGG: ava:Ava_4413 4.0e-132 RNA methyltransferase TrmH, group 3 K03218; Psort location: Cytoplasmic, score: 8.96; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
  
 0.538
EKF00502.1
Putative NOL1/NOP2/sun family protein; KEGG: bbe:BBR47_43550 7.3e-30 probable ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.536
EKF05389.1
Allophycocyanin; KEGG: amt:Amet_3605 0.98 alanine--glyoxylate transaminase K00839.
       0.525
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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