STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF05390.1tRNA synthase; KEGG: npu:Npun_R0877 7.3e-204 RNA methyltransferase; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (455 aa)    
Predicted Functional Partners:
trmB
tRNA synthase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.721
rsmI
TIGR00096 protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.669
EKF00369.1
rRNA SAM-dependent protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.661
EKE96619.1
Ribosomal protein S1; KEGG: fal:FRAAL1781 2.5e-45 rpsA; 30S ribosomal protein S1 K02945; Psort location: Cytoplasmic, score: 9.97.
  
    0.640
EKE99840.1
Ribosomal protein S1; KEGG: hor:Hore_10450 1.3e-34 4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
    0.640
EKF00595.1
tRNA guanosine-2'-O-methyltransferase; KEGG: ava:Ava_4413 4.0e-132 RNA methyltransferase TrmH, group 3 K03218; Psort location: Cytoplasmic, score: 8.96; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
  
 0.620
EKF04871.1
KEGG: npu:Npun_F5720 3.4e-112 tRNA/rRNA methyltransferase (SpoU) K03437; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
  
 0.595
EKF00502.1
Putative NOL1/NOP2/sun family protein; KEGG: bbe:BBR47_43550 7.3e-30 probable ribosomal RNA small subunit methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.586
pheT
KEGG: npu:Npun_F1087 0. phenylalanyl-tRNA synthetase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.94.
 
    0.586
prmA
Ribosomal protein L11; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
 
   
 0.577
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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