STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF03464.1CobW/P47K family protein; KEGG: reh:H16_A3373 1.2e-66 G3E family GTPase; Psort location: Cytoplasmic, score: 8.96. (323 aa)    
Predicted Functional Partners:
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.747
rpmB
Ribosomal protein L28; KEGG: bce:BC3926 0.95 ATP-dependent protease La K07177; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.677
EKF03465.1
WD domain, G-beta repeat protein; KEGG: afm:AFUA_7G07100 2.0e-22 Pfs, NACHT and WD domain protein K00777.
 
     0.676
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.657
map-2
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.657
EKE99080.1
ABC transporter, ATP-binding protein; KEGG: npu:Npun_R5107 2.6e-144 ABC transporter related K01990; Psort location: Cytoplasmic, score: 9.12.
     
  0.603
EKF06245.1
Periplasmic solute binding family protein; KEGG: sah:SaurJH1_2478 5.4e-16 ribulose-phosphate 3-epimerase K01783; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.542
EKF05509.1
Periplasmic solute binding family protein; KEGG: saj:SaurJH9_2430 5.7e-25 ribulose-phosphate 3-epimerase K01783; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.542
EKF00161.1
Periplasmic solute binding family protein; KEGG: saj:SaurJH9_2430 1.2e-16 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.542
hisI
KEGG: npu:Npun_F4098 6.9e-105 phosphoribosyl-AMP cyclohydrolase K11755; Psort location: Cytoplasmic, score: 9.97; In the N-terminal section; belongs to the PRA-CH family.
     
 0.413
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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