Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EKF03472.1 | EKF03473.1 | FDUTEX481_02600 | FDUTEX481_02601 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | roadblock/LC7 domain protein; KEGG: hch:HCH_01805 0.078 cysM; cysteine synthase B K12339. | 0.999 |
| EKF03472.1 | ffh | FDUTEX481_02600 | FDUTEX481_08130 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.930 |
| EKF03472.1 | ftsY | FDUTEX481_02600 | FDUTEX481_05334 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Signal recognition particle subunit; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.995 |
| EKF03472.1 | rplB | FDUTEX481_02600 | FDUTEX481_06960 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.871 |
| EKF03472.1 | rplC | FDUTEX481_02600 | FDUTEX481_06963 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.871 |
| EKF03472.1 | rplM | FDUTEX481_02600 | FDUTEX481_06936 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.871 |
| EKF03472.1 | rplN | FDUTEX481_02600 | FDUTEX481_06953 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.872 |
| EKF03472.1 | rplR | FDUTEX481_02600 | FDUTEX481_06948 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.876 |
| EKF03472.1 | rplW | FDUTEX481_02600 | FDUTEX481_06961 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.870 |
| EKF03472.1 | rpmC | FDUTEX481_02600 | FDUTEX481_06955 | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | Ribosomal protein L29; KEGG: mgm:Mmc1_3676 0.066 ATP synthase F0, B subunit; K02109 F-type H+-transporting ATPase subunit b; Belongs to the universal ribosomal protein uL29 family. | 0.872 |
| EKF03473.1 | EKF03472.1 | FDUTEX481_02601 | FDUTEX481_02600 | roadblock/LC7 domain protein; KEGG: hch:HCH_01805 0.078 cysM; cysteine synthase B K12339. | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | 0.999 |
| ffh | EKF03472.1 | FDUTEX481_08130 | FDUTEX481_02600 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | GTP-binding protein; KEGG: cdf:CD0022 0.0088 putative translation elongation factor; K02355 elongation factor EF-G. | 0.930 |
| ffh | ftsY | FDUTEX481_08130 | FDUTEX481_05334 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Signal recognition particle subunit; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.994 |
| ffh | rplB | FDUTEX481_08130 | FDUTEX481_06960 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.973 |
| ffh | rplC | FDUTEX481_08130 | FDUTEX481_06963 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.973 |
| ffh | rplM | FDUTEX481_08130 | FDUTEX481_06936 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.973 |
| ffh | rplN | FDUTEX481_08130 | FDUTEX481_06953 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.971 |
| ffh | rplR | FDUTEX481_08130 | FDUTEX481_06948 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.968 |
| ffh | rplW | FDUTEX481_08130 | FDUTEX481_06961 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.969 |
| ffh | rpmC | FDUTEX481_08130 | FDUTEX481_06955 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Ribosomal protein L29; KEGG: mgm:Mmc1_3676 0.066 ATP synthase F0, B subunit; K02109 F-type H+-transporting ATPase subunit b; Belongs to the universal ribosomal protein uL29 family. | 0.970 |
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