STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF03382.1Hypothetical protein; KEGG: eci:UTI89_C0905 0.076 ftsK; DNA translocase FtsK K03466; Psort location: CytoplasmicMembrane, score: 9.27. (523 aa)    
Predicted Functional Partners:
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
 0.914
EKE99173.1
POTRA domain, FtsQ-type; KEGG: tte:TTE1196 0.92 dtd; D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase.
   
 0.900
EKF04046.1
Exoribonuclease; KEGG: npu:Npun_F6222 0. VacB/RNase II family 3'-5' exoribonuclease K12573; Psort location: Cytoplasmic, score: 8.96; Belongs to the RNR ribonuclease family.
   
 0.896
EKF02071.1
Ribonuclease II; KEGG: ava:Ava_1322 0. ribonuclease II K01147; Psort location: Cytoplasmic, score: 9.97.
   
 0.896
EKE96619.1
Ribosomal protein S1; KEGG: fal:FRAAL1781 2.5e-45 rpsA; 30S ribosomal protein S1 K02945; Psort location: Cytoplasmic, score: 9.97.
  
 0.868
EKE99840.1
Ribosomal protein S1; KEGG: hor:Hore_10450 1.3e-34 4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
 0.868
rtcA
RNA 3'-terminal-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
   
  0.852
EKF03236.1
Putative helicase; KEGG: hsl:OE8016F 8.1e-51 ATP-dependent helicase; Psort location: Cytoplasmic, score: 8.96.
  
 0.850
EKF01001.1
Hypothetical protein; KEGG: cgt:cgR_1633 0.080 phosphoenolpyruvate carboxylase K01595.
  
 0.850
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 0.813
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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