STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF04046.1Exoribonuclease; KEGG: npu:Npun_F6222 0. VacB/RNase II family 3'-5' exoribonuclease K12573; Psort location: Cytoplasmic, score: 8.96; Belongs to the RNR ribonuclease family. (784 aa)    
Predicted Functional Partners:
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
 0.941
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
   
 
 0.910
EKF03382.1
Hypothetical protein; KEGG: eci:UTI89_C0905 0.076 ftsK; DNA translocase FtsK K03466; Psort location: CytoplasmicMembrane, score: 9.27.
   
 0.896
EKF02263.1
FtsK/SpoIIIE family cell division protein; KEGG: ana:all1697 1.8e-50 hypothetical protein; K03684 ribonuclease D; Psort location: CytoplasmicMembrane, score: 7.88.
   
 0.896
EKF02597.1
Exonuclease; KEGG: npu:Npun_F5743 1.2e-121 3'-5' exonuclease; K03684 ribonuclease D.
   
 0.882
EKF02253.1
Ribonuclease D; KEGG: ava:Ava_1914 3.2e-91 3'-5' exonuclease; K03684 ribonuclease D; Psort location: Cytoplasmic, score: 8.96.
   
 0.882
EKF03236.1
Putative helicase; KEGG: hsl:OE8016F 8.1e-51 ATP-dependent helicase; Psort location: Cytoplasmic, score: 8.96.
  
 0.819
EKF01001.1
Hypothetical protein; KEGG: cgt:cgR_1633 0.080 phosphoenolpyruvate carboxylase K01595.
  
 0.819
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.792
EKF04871.1
KEGG: npu:Npun_F5720 3.4e-112 tRNA/rRNA methyltransferase (SpoU) K03437; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
 
 0.778
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.