STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKF03924.1RNA-binding protein; KEGG: dpe:Dper_GL17434 9.0e-13 GL17434 gene product from transcript GL17434-RA; K03019 DNA-directed RNA polymerase III subunit C11; Psort location: Cytoplasmic, score: 8.96; Belongs to the SUA5 family. (221 aa)    
Predicted Functional Partners:
EKF03923.1
Hypothetical protein; KEGG: rso:RSp0626 0.13 cobN, RS03741; cobalamin biosynthesis protein; K02230 cobaltochelatase CobN; Psort location: Cytoplasmic, score: 8.96; Belongs to the LarC family.
     
 0.711
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.654
EKF05679.1
TIGR00150 protein; KEGG: rop:ROP_62420 3.4e-16 putative ATPase K06925.
    
 0.616
EKE99645.1
Universal bacterial protein YeaZ; KEGG: bcz:BCZK0233 2.3e-08 O-sialoglycoprotein endopeptidase (glycoprotease) K01409.
    
 0.616
EKF03922.1
Hypothetical protein; KEGG: vok:COSY_0002 0.35 dnaN; DNA polymerase III beta subunit K02338.
       0.494
rpoZ
DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
    0.478
EKF00595.1
tRNA guanosine-2'-O-methyltransferase; KEGG: ava:Ava_4413 4.0e-132 RNA methyltransferase TrmH, group 3 K03218; Psort location: Cytoplasmic, score: 8.96; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
  
 0.428
EKF00369.1
rRNA SAM-dependent protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
    0.423
miaA
tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
   
 0.419
EKF03925.1
Hypothetical protein; KEGG: yps:YPTB0915 0.96 sbcC; putative ATP-dependent dsDNA exonuclease K03546; Psort location: Cytoplasmic, score: 8.96.
       0.417
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.