STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKE99140.1DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (94 aa)    
Predicted Functional Partners:
EKE99775.1
Replicative DNA helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.911
EKF00393.1
KEGG: npu:Npun_R3585 0. ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
    
  0.910
dnaA
DNA-directed DNA replication protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.883
rplS
Ribosomal protein L19 splS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.880
EKF05531.1
Phage/plasmid primase; KEGG: apa:APP7_0806 5.0e-28 putative primase; Psort location: Cytoplasmic, score: 8.96.
    
 0.844
EKF04370.1
Putative DNA primase; KEGG: ecm:EcSMS35_0946 2.5e-22 nucleoside triphosphatase, D5 family.
    
 0.844
EKE98967.1
Phage/plasmid primase, P4 family protein; KEGG: ecm:EcSMS35_4012 2.8e-17 nucleoside triphosphatase, D5 family; Psort location: Cytoplasmic, score: 8.96.
    
 0.844
EKE96523.1
Putative ATPase; KEGG: sty:STY4832 1.1e-16 bacteriophage P4 DNA primase K00992; Psort location: Cytoplasmic, score: 8.96.
    
 0.844
EKF03785.1
KEGG: npu:Npun_F4123 7.4e-195 DNA polymerase III, subunits gamma and tau K02343.
  
 
 0.802
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.791
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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