STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKE98679.1SNF2 family DNA/RNA helicase; KEGG: cyp:PCC8801_0290 1.6e-167 non-specific serine/threonine protein kinase; Psort location: Cytoplasmic, score: 8.96. (1080 aa)    
Predicted Functional Partners:
EKE98680.1
SWIM zinc finger protein; KEGG: pmo:Pmob_0294 3.5e-29 non-specific serine/threonine protein kinase; Psort location: Cytoplasmic, score: 8.96.
    0.995
EKE99310.1
Zinc finger protein, SWIM family; KEGG: pmo:Pmob_0294 6.2e-30 non-specific serine/threonine protein kinase; Psort location: OuterMembrane, score: 9.49.
    0.978
EKF03314.1
Hypothetical protein; KEGG: cja:CJA_0651 0.044 hemA; glutamyl-tRNA reductase K02492; Psort location: Cytoplasmic, score: 8.96.
    
 0.846
EKF01304.1
Helicase; KEGG: lsp:Bsph_0793 1.9e-08 ATP-dependent helicase YqhH; Psort location: Cytoplasmic, score: 8.96.
  
 0.840
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.838
EKF04093.1
KEGG: reh:H16_A1382 1.9e-63 histone deacetylase family deacetylase.
    
 0.802
EKF02625.1
Histone deacetylase family protein; KEGG: bme:BMEI1504 1.7e-55 acetylspermidine deacetylase K01454.
    
 0.802
EKF02471.1
Amine oxidase; KEGG: ban:BA1924 3.5e-21 amine oxidase, flavin-containing; K00274 monoamine oxidase.
    
  0.791
rpoZ
DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.784
rpoA
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.778
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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