STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKE98368.1KEGG: reh:H16_A2563 1.3e-23 rpoE1; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily. (218 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.904
rpoA
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.904
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.896
rpoC2
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.
  
 
 0.880
EKE98369.1
Hypothetical protein; KEGG: ank:AnaeK_1099 0.72 ribosomal RNA methyltransferase RrmJ/FtsJ; K02427 cell division protein methyltransferase FtsJ; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.867
rpoC1
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.859
EKE99180.1
KEGG: pmj:P9211_18311 7.8e-18 type II alternative sigma-70 family RNA polymerase sigma factor K03086; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.835
EKF05874.1
Protein-glutamate methylesterase CheB; KEGG: ava:Ava_0314 4.3e-67 signal transduction histidine kinase (STHK) with CheB and CheR activity; K00575 chemotaxis protein methyltransferase CheR K00936:K03412; Psort location: Cytoplasmic, score: 9.26.
   
 0.833
EKF00119.1
KEGG: tet:TTHERM_00384880 0.017 Protein kinase domain containing protein K00908; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.728
EKF03294.1
Hypothetical protein; KEGG: bmj:BMULJ_04208 0.022 2,4-dihydroxyacetophenone dioxygenase; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.718
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.