STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF01246.1Putative RNA-binding protein; KEGG: lsa:LSA0220_c 0.63 dapE; succinyl-diaminopimelate desuccinylase K01439. (139 aa)    
Predicted Functional Partners:
rpsP
Ribosomal protein S16; KEGG: xac:XAC1808 0.0029 aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+); Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bS16 family.
  
  
 0.981
EKF03968.1
Putative R3H single-stranded nucleic acid binding protein; KEGG: bpm:BURPS1710b_A1185 0.071 maltose/maltodextrin import ATP-binding protein MalK K02023; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.909
EKF00191.1
Single-stranded nucleic acid; KEGG: hau:Haur_0242 0.38 DNA-directed RNA polymerase, beta' subunit; K03046 DNA-directed RNA polymerase subunit beta'; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.909
rplS
Ribosomal protein L19 splS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.895
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
    0.878
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
    0.878
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
    0.868
EKF05063.1
Ribonuclease E/G; KEGG: ava:Ava_1281 0. ribonuclease E and G; K08300 ribonuclease E.
    
   0.867
rpsI
Ribosomal protein S9; KEGG: pmx:PERMA_1161 0.88 lon; ATP-dependent protease La K01338; Psort location: Cytoplasmic, score: 9.26; Belongs to the universal ribosomal protein uS9 family.
  
    0.860
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
    0.859
Your Current Organism:
Tolypothrix sp. PCC7601
NCBI taxonomy Id: 1188
Other names: Calothrix sp. PCC 7601, Fremyella diplosiphon ACMM 396, Fremyella diplosiphon IAM M-100, Fremyella diplosiphon UTEX B 481, Microchaete diplosiphon UTEX B 481, T. sp. PCC 7601, Tolypothrix (Calothrix) sp. PCC 7601, Tolypothrix sp. PCC 7601, Tolypothrix sp. PCC 7601 = UTEX B 481
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